{"id":371,"date":"2018-04-20T02:16:07","date_gmt":"2018-04-20T02:16:07","guid":{"rendered":"https:\/\/my.dev.vanderbilt.edu\/tractem\/?p=371"},"modified":"2018-07-23T21:18:32","modified_gmt":"2018-07-23T21:18:32","slug":"superior-cerebellar-peduncle-scp","status":"publish","type":"post","link":"https:\/\/my.dev.vanderbilt.edu\/tractem\/2018\/04\/20\/superior-cerebellar-peduncle-scp\/","title":{"rendered":"Superior Cerebellar Peduncle (scp)"},"content":{"rendered":"

Protocol PDF Document (version 1.2):<\/strong>\u00a0scp<\/a><\/p>\n

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Instructions: <\/strong><\/p>\n

    \n
  1. Create two separate coronal seed regions (at approx. coronal\u00a0slice 114), one for each side.<\/li>\n<\/ol>\n

    \"Screen<\/p>\n

      \n
    1. Create two separate coronal ROI regions (at approx. coronal\u00a0slice 104), one for each side. Then run fiber tracking. Based on this output, ROA placement will be clearer.<\/li>\n<\/ol>\n

      \"Screen<\/p>\n

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      1. Create one ROA file and draw three different regions:\n
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            \n
          1. on an axial slice superior to the seed regions<\/li>\n
          2. on an axial slice inferior to the seed region<\/li>\n
          3. on a coronal slice inferior to the seed region<\/li>\n<\/ol>\n<\/ol>\n<\/li>\n<\/ol>\n
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            1. In the region list, check only the left seed region and ROA regions, then perform fiber tracking. Under the tract list, make sure only the desired left tract is checked and highlighted in purple. Save region, tract, and density files.<\/li>\n<\/ol>\n
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              1. Uncheck the left seed region and check the right seed region and ROA region, then perform fiber tracking. Make sure only the desired right tract is checked and highlighted in purple. Save region, tract, and density files.<\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"

                Protocol PDF Document (version 1.2):\u00a0scp Instructions: Create two separate coronal seed regions (at approx. coronal\u00a0slice 114), one for each side. Create two separate coronal ROI regions (at approx. coronal\u00a0slice 104), one for each side. Then run fiber tracking. Based on … Continue reading →<\/span><\/a><\/p>\n","protected":false},"author":1920,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"categories":[5],"tags":[],"class_list":["post-371","post","type-post","status-publish","format-standard","hentry","category-protocol"],"_links":{"self":[{"href":"https:\/\/my.dev.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/posts\/371","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/my.dev.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/my.dev.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/my.dev.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/users\/1920"}],"replies":[{"embeddable":true,"href":"https:\/\/my.dev.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/comments?post=371"}],"version-history":[{"count":9,"href":"https:\/\/my.dev.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/posts\/371\/revisions"}],"predecessor-version":[{"id":862,"href":"https:\/\/my.dev.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/posts\/371\/revisions\/862"}],"wp:attachment":[{"href":"https:\/\/my.dev.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/media?parent=371"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/my.dev.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/categories?post=371"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/my.dev.vanderbilt.edu\/tractem\/wp-json\/wp\/v2\/tags?post=371"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}