{"id":656,"date":"2012-02-01T09:32:55","date_gmt":"2012-02-01T14:32:55","guid":{"rendered":"https:\/\/my.dev.vanderbilt.edu\/masi\/?p=656"},"modified":"2016-11-01T10:47:18","modified_gmt":"2016-11-01T15:47:18","slug":"simultaneous-segmentation-and-statistical-label-fusion","status":"publish","type":"post","link":"https:\/\/my.dev.vanderbilt.edu\/masi\/2012\/02\/simultaneous-segmentation-and-statistical-label-fusion\/","title":{"rendered":"Simultaneous Segmentation and Statistical Label Fusion."},"content":{"rendered":"<p>A. Asman and B. Landman. \u201cSimultaneous Segmentation and Statistical Label Fusion.\u201d In Proceedings of the SPIE Medical Imaging Conference. San Diego, California, February 2012 (Oral Presentation) \u2020<\/p>\n<p><strong>Full Text: <\/strong><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24357909\">https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24357909<\/a><\/p>\n<h2>Abstract<\/h2>\n<p>Labeling or <span class=\"highlight\">segmentation<\/span> of structures of interest in medical imaging plays an essential role in both clinical and scientific understanding. Two of the common techniques to obtain these labels are through either fully automated <span class=\"highlight\">segmentation<\/span> or through multi-atlas based <span class=\"highlight\">segmentation<\/span> and <span class=\"highlight\">label<\/span> <span class=\"highlight\">fusion<\/span>. Fully automated techniques often result in highly accurate segmentations but lack the robustness to be viable in many cases. On the other hand, <span class=\"highlight\">label<\/span> <span class=\"highlight\">fusion<\/span> techniques are often extremely robust, but lack the accuracy of automated algorithms for specific classes of problems. Herein, we propose to perform <span class=\"highlight\">simultaneous<\/span> automated <span class=\"highlight\">segmentation<\/span> and <span class=\"highlight\">statistical<\/span> <span class=\"highlight\">label<\/span> <span class=\"highlight\">fusion<\/span> through the reformulation of a generative model to include a linkage structure that explicitly estimates the complex global relationships between labels and intensities. These relationships are inferred from the atlas labels and intensities and applied to the target using a non-parametric approach. The novelty of this approach lies in the combination of previously exclusive techniques and attempts to combine the accuracy benefits of automated <span class=\"highlight\">segmentation<\/span> with the robustness of a multi-atlas based approach. The accuracy benefits of this <span class=\"highlight\">simultaneous<\/span> approach are assessed using a multi-<span class=\"highlight\">label<\/span> multi- atlas whole-brain <span class=\"highlight\">segmentation<\/span> experiment and the <span class=\"highlight\">segmentation<\/span> of the highly variable thyroid on computed tomography images. The results demonstrate that this technique has major benefits for certain types of problems and has the potential to provide a paradigm shift in which the lines between <span class=\"highlight\">statistical<\/span> <span class=\"highlight\">label<\/span> <span class=\"highlight\">fusion<\/span> and automated <span class=\"highlight\">segmentation<\/span> are dramatically blurred.<\/p>\n<figure id=\"attachment_657\" aria-describedby=\"caption-attachment-657\" style=\"width: 500px\" class=\"wp-caption alignnone\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-657\" src=\"https:\/\/my.dev.vanderbilt.edu\/masi\/wp-content\/uploads\/sites\/2304\n2661\/2016\/11\/nihms-342590-f0001.jpg\" alt=\"nihms-342590-f0001\" width=\"500\" height=\"158\" \/><figcaption id=\"caption-attachment-657\" class=\"wp-caption-text\">Figure 1 The ability to infer target intensity information from the registered atlases. The image seen in (A) indicates the relative size and shape of the five labels that are analyzed in this example. The images seen in (B) and (C) show the true and estimated intensity probability density functions. The results indicate that it is possible to infer basic information about the complex relationships between labels and intensity using the registered atlases<\/figcaption><\/figure>\n","protected":false},"excerpt":{"rendered":"<p>A. Asman and B. Landman. \u201cSimultaneous Segmentation and Statistical Label Fusion.\u201d In Proceedings of the SPIE Medical Imaging Conference. San Diego, California, February 2012 (Oral Presentation) \u2020 Full Text: https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24357909 Abstract Labeling or segmentation of structures of interest in medical imaging plays an essential role in both clinical and scientific understanding. Two of the common&#8230;<\/p>\n","protected":false},"author":6300,"featured_media":657,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[3,46,4],"tags":[75,98],"class_list":["post-656","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-image-segmentation","category-multi-atlas-segmentation","category-neuroimaging","tag-brain","tag-thyroid"],"_links":{"self":[{"href":"https:\/\/my.dev.vanderbilt.edu\/masi\/wp-json\/wp\/v2\/posts\/656","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/my.dev.vanderbilt.edu\/masi\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/my.dev.vanderbilt.edu\/masi\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/my.dev.vanderbilt.edu\/masi\/wp-json\/wp\/v2\/users\/6300"}],"replies":[{"embeddable":true,"href":"https:\/\/my.dev.vanderbilt.edu\/masi\/wp-json\/wp\/v2\/comments?post=656"}],"version-history":[{"count":2,"href":"https:\/\/my.dev.vanderbilt.edu\/masi\/wp-json\/wp\/v2\/posts\/656\/revisions"}],"predecessor-version":[{"id":760,"href":"https:\/\/my.dev.vanderbilt.edu\/masi\/wp-json\/wp\/v2\/posts\/656\/revisions\/760"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/my.dev.vanderbilt.edu\/masi\/wp-json\/wp\/v2\/media\/657"}],"wp:attachment":[{"href":"https:\/\/my.dev.vanderbilt.edu\/masi\/wp-json\/wp\/v2\/media?parent=656"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/my.dev.vanderbilt.edu\/masi\/wp-json\/wp\/v2\/categories?post=656"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/my.dev.vanderbilt.edu\/masi\/wp-json\/wp\/v2\/tags?post=656"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}